Within water of the cells and tissues
When hydrogen ions equal hydroxide ions
When there are more hyrdrogen ions than hydroxide ions
When the number of hydroxide ions is greater than the number of hydrogen ions
pH 2.5-3.0 -> Stomach acid
pH 8 -> intestines
Cellular functions need a specific pH to work, and when this is changed they cannot carry out their necessary tasks
They act as "buffers" within the body to regulate pH changes by absorbing excess acid or base
Neutralization is changing an acid or base to neutral
Buffers maintain a specific acid or base level and don't change it
1)carbohydrates
2)Lipids
3)Proteins
4)nucleic acids
Carbon, because it has four places to bond with other molecules/atoms
Molecules within the body containing carbon
Molecules in the body not containing carbon
the formation of larger molecules from smaller ones
Needs energy to work
The breaking down of larger molecules into smaller ones
Releases energy
Water because of its solvent properties
Carbohydrates
Oxygen, hydrogen, and carbon
Cannot make them ourselves, rely on plants
single sugar units or polymers of many sugar units
A single sugar unit containing oxygen, hydrogen, and carbon in a 1:2:1 ratio
isomer - one single unit of sugar
polymer - multiple conjoined sugar units
Double or two conjoined sugar units
Through a condensation reaction which takes water out of the molecules to allow them to join
maltose, sucrose, lactose
polmers made from condensation of 3 or more sugar units
starch is an example
present in plant cells
long chains of carbs
comes in two forms - amylose and amylopectin
starch is stored in seeds and used as energy until plant can photosynthesize
glycogen contains more chains of glucose
breakdown of Polysaccharides to Monosaccharides - takes in one water molecule
storage molecule for plants
made up of chains of glucose attached by hydrogen bonds
these bonds make the plant's cell wall stiff and tirgid
this is a structural molecule
cannot be broken down by mammals
Can easily undergo condensation or hydrolysis to store or use as energy
Because of their larger size they are relatively insoluble
starch and glycogen are examples of this
they hold many bonds that 'store' energy until it is needed
Number of monomers = n
Number of bonds = (n-1)
Source: Plant
Subunit: B-glucose
Bonds: 1-4
hydrogens are opposite and staggered in chain
shape is linear and parallel
Amylose
Source: plant
Subunit: a-glucose
bonds: 1-4
No branches
hydrogens are on same side as one another, no gaps
shape is helical
Amylopectin
Source: Plant
Subunit: a-glucose
bonds: 1-4 and 1-6
Branching (about every 20 subunits)
Shape is branching but not super compact
Source: Animal
Subunit: a-glucose
Bonds: 1-4 and 1-6
Branching (about every 10 subunits)
Shape is branched and very compact
- used to build starch and glycogen
- energy molecule
- Used to build cellulose
- energy molecule
- component of genetic material RNA (ribonucleic acid)
- component of DNA (deoxyribonucleic acid)
- intermediate in the digestion of starch
- used as sweetener and found naturally in peaches and pears
- source of energy
- used as the most common sweetener
- energy providing nutrient
- "milk sugar" produced by lactating mammals
- storage
- more difficult for humans to digest compared to amylopectin
- low glycemic index - slow rise is blood sugar
- storage
- easier for humans to digest compared to amylose
- high glycemic index (fast rise in blood sugar)
- storage in muscles and livers of mammals
- Structure inplant cell wall
- non-polar
- insoluble inpolar solvents
- hold more energy per unit than both carbs and proteins (9Kcal/g)
- Composed of two structural units (glycerol and fatty acid)
- hydrophobic tail (fatty acids) and hydrophilic head (phosphate and glycerol)
They keep the inside of the membrane dry due to their bilayer configuration keeping the heads submerged in water and the tails dry and compacted next to one another
head - polar
tail - non-polar
- tryglycerides
- phospholipids
- steroids and waxes
Saturated and unsaturated
- solid at room temp
- single bond between carbons (no double or triple bond and no bend in molecule)
- denser and more harmful formations than unsaturated fats
- liquid at room temperature
- more doble bonds -> lower melting point
- the double bonds of the carbons allow molecule to bend and form less dense formations
Cis -> hydrogens attached to double bond are on same side -> more bends in molecule
Trans -> hydrogens are on opposite sides -> creates unatural linear shape that is the most unhealthy for you
industrial process of hydrogenation -> adding hydrogens for longer shelf life
cis -> liquid
trans -> solid
- most common and largest class of lipids
- stored in animals as solids
- stored in plants as liquids
- formed when condensation reaction occures between three fatty acids and one glycerol molecule
- long-term energy storage
- thermal insulators to body temperature in our habitat
1) phospholipids make up cell membrane and some lipids act as hormones
2) lipids have twice the energy content of carbs and proteins
3) heat insulation in animals
4) storage molecule - doesn't require water
5) for protection of exposed internal organs
- structural components of all cells
- composed of hydrogen, carbon, oxygen, AND nitrogen (sometimes sulphur)
- made up of amino acids
- has a central carbon atom
- carboxyl group
- amino group
- hydrogen atom
- R group - specific to 20 different amino acids
- depends on the side chains of the amino acids
- non-polar -> non-polar side chains (R groups)
- polar amino -> polar side chain (R group)
20 total
12 of them created naturally
8 of them through diet (essential amino acids)
- hydrophobic
- no overall charge or unequal distribution of electrons on R group
- only change is the R group, which gives different chemical properties
- there is no oxygen in nonpolar side chains
- hydrophilic
- partial or unequal distribution of electrons in R group
- contains oxygen and sulfur
- hydrophilic
- polar
full gain or loss of electrons resulting in complete charge
- contains NH+ if positive
- contains O- if negatively charged
1. is it an amino acid? Do you see an amine group, a carboxyl group, and an alpha carbon?
2. Find the R group, do you see an oxygen atom?
a. NO.. amino acid is non-polar
b. YES.. do you see a charge?
i. NO.. amino acid is polar
ii. YES..amino acid is an ion
Amino group of one AA links with the Carboxyl group of another, they undergo a condensation reaction and a water molecule is removed, linking them together
Polymerization
3 or more amino acids
one or more polypeptides
1. transport
2. contraction of muscles
3. enzymes
4. hormones
5. antibodies
6. structural proteins
7. storage
8. plasma proteins
9. receptors
measure of the unusable energy within a system
involve energy input, energy conversions, and energy output
Within cells.
are reactions that occur within the cells of plants and animals
energy required to initiate a chemical reaction
Exergonic
Endergonic
a series of steps from a starter molecule or precursor toward a final end product
1) speed up reactions in the form of biological catalysts
2) control metabolism within all organisms
3) lower the amount of activation energy necessary for a metabolic reaction, therefore less energy is needed for the goal to be reached
chemicals which regulate the rate of chemical reactions without themselves being altered
1) reactants need to have bonds broken
2) molecules need to re-orient
3) new bonds need to be formed
Will break apart a substrate into two or more pieces
They will join two or more substrates together into one product
Substrates can only fit into very specific enzymes, but because they are both in abundance within the body random collisons ensure that they will join together
When the two components are bonded together
The folding of its amino acids within the protein
Pocket/Active site
Enzyme body
Allosteric inhibitor site
Lock and Key model
Induced fit model
When the active site of the enzyme shifts in shape slightly to accomodate the substrates entering it and changing them during the reaction. The substrates will be changed after this, but the enzyme will return to its original shape and can be used again.
- temperature
- pH
- enzyme concentration
- substrate concentration
It will denature, meaning that its folds will loosen and the active site will no longer fit the correct substrate
- reaction rate increases as temperature increases
- this is because temperature increases the number of collisons
- temperature cannot be too high or low or it will denature (too low and no movement, too high and too much movement as well as denaturation)
about 37 degrees celcius
- different parts of the body function at different pH's, and therefore the enzymes within those parts will have different optimums
- a pH too low or high will denature an enzyme
- the greater the number of substrate molecules the greater the number of collisons and substrate-enzyme complexes formed
- this will increase until the number of enzymes becomes a limiting factor
(this is the same for enzyme concentration)
changing of an enzymes capabilities or activity due to an outsider molecule called an effector
this binds to a part of the enzyme other than the active site
this is reversible
positive:
- improves binding affinity
- example is oxygen in haemoglobin
negative:
- reduces binding affinity
- can also be called non-competitive inhibition as it is reducing binding capabilities but not in direct competition with substrates for the active site
1) the rate of enzyme production and breakdown
- this has to be somewhat balanced in order for the continued functionality of metabolic reactions
2) enzyme interactions with substrates
- have to be constant and numerous
3) presence of inhibitors
- will seriously inhibit or stop ability to bind with substrates
when substances other than the substrate bind directly with the active site in order for the substrate to not gain access
An example of this is carbon monoxide taking the place of oxygen in an enzyme due to the fact they have the same compound shape and therefore the enzyme cannot tell the difference
competitive inhibitors purposely used to lower cholesterol, as it blocks the active site of the enzyme
An inhibitor affects the enzyme by binding to a site other than the active site and reducing its ability to bind with a substrate
Unlike competitive types, this cannot be solved by increasing the amount of substrate available to move the inhibitor
The use of an allosteric inhibitor (non-competitive) as a way to turn an enzyme "on" and "off" when necessary
In this way, the inhibitor can be the final product and can stop the enzyme from completing earlier steps in the metabolic pathway that are no longer necessary
Negative feedback
- mechanism based inhibition
- when an allosteric inhibitor irreversibly binds to an enzyme, making sure no other substrate can reach it and harming the organism
intracellular enzyme-catalyzed reactions
extracellular enzyme-cactlyzed reactions
- ingestion -> taking in of necessary nutrients
- digestion -> the breakdown of complex molecules into smaller pieces with more surface area
- absorption -> the nutrients into the blood
- assimilation -> nutrient transport to the cells of the body
- egestion -> matter leaves digestive tract (not excretion)
physical - the actual physical breakdown without any molecule changes
done so more surface area is created to act on, as well as fit through the digestive tract
The parts responsible for this: teeth, tongue, muscle movements
chemical - macromolecules are broken down chemically by enzymes
chemically breaks bonds on molecular level
Lumen
Villi
Mucosa
Sub-mucosa
Longitudinal muscle
Circular muscle
(amount of villi depends on whether the specific part must do a lot of absorption or not)
endocrine:
- secretes hormones directly into the blood, closed system
exocrine:
- secretes hormones or enzymes into a duct, eventually releasd from body
1) digestion in the mouth
- teeth and tongue
- increases surface area for enxymes to work
- food is mixed with saliva produced by the submaxilliary and sublingual glands
- salivary amylase within the saliva starts to break down carbohydrates
this is initiated by a nerve reflex when the mouth tastes or smells food
- water
- mucous
- salts (to balance pH)
- salivary amylase
-lubrication
-dissolves food particles
-cleans mouth of debris
-begins digestion of carbohydrates
It is the movement of the longitudinal and circular muscles of the esophagus after the swallowing of food through the larnyx that allows for the food to continuously move downwards without the risk of it coming back up
Digestion in the stomach
- is a j shaped organ below the ribs
- bag shaped and filled with liquid, so ended with sphincters
- stops gastric juice from entering the esophagus
- allows new food to enter the stomach
- stops acidic chyme from entering the small intestine
- allows small amounts of food to pass through
made up of:
-mucous
- acid
-enzymes
controlled by the enzyme GASTRIN which circulates the blood and prolongs the production of gastric juices
mucous cells - secrete muscous as a protective coating for the stomach wall
parietal cells - secrete HCL to lower pH of stomach to allow enzymes to work, but also helps physical and chemical digestion and the killing of harmful microbes
chief/peptic cells - secrete pepsinogen, which then turns into the active enzyme pepsin in contact with HCL to start the digestion of protein
Ulcers are when damage is caused to the lining of the stomch, causing the stomach wall to be vulnerable to harmful enzymes and bacteria.
One cause of stomach ulcers are the bacteria H. Pylori, which is a bacteria which secretes muconase, an enzyme which breaks down mucous and therefore leaves the stomach lining vulnerable to attack. - this happens over many years as most (50-70 percent) of adults have this type of bacteria.
- two types of treatments - antibiotics and medications (competitive inhibtors) to slow down HCl production
to begin digestion
to absorb alcohol, water, and monosaccharides already present in food (straight sugar)
- duodenum - first 25-30 cm and is the source of major digestion
- jejunum -next 20-30 cm and is a transitional area for nutrients
- Ileum - remaining 6 m and is the major absorption area
- common bile duct from liver
- cystic duct from gallbladder
pancreatic duct
Liver secretions (bile), pancreatic secretions, and intestinal secretions
Bile stored in the gall bladder
Cholecystokinin or cck
Enterogastrone
Bile pigments, sodium bicarbonate, bile salts
- broken down haemoglobin or dead red blood cells that need to be excreted through feces
- neutraizes stomach acid to reach the proper ph for the duodenum which is around 8
- emulsify fats and turn them into tiny droplets to increase surface areas for lipases
- secretin
- passes through the bloodstream to the pancreas
- sodium bicarbonate
- pancreatic amylase
- pancreatic lipase
- trypsinogen
- nucleases
- turns long chain polysaccharides into short chain polysaccharides
- turns lipids into fatty acids and glycerol
- the inactive form of trypsin, which is activated by enterokinase
- continues the digestion of protein
- long polypeptides - short polypeptides
- turn nucleic acids into nucleotides
- stimulated in the presence of food in the small intestine
- many are immobilized/inactive enzymes that need food to work
- mucous
- sodium bicarbonate
- enterokinase
- erepsins
- intestinal carbohydrases
- lubricates and protects intestinal lining from proteases
- acts on trypsinogen to produce trypsin
- they turn short chain polypeptides into amino acids through targeting different ends of the polypeptide chains
- aminopeptidases attack the amino side
- carboxydases attack the carboxyl side
- maltase
- sucrase
- lactase
- carbohydrates have been converted into soluble monosaccharides
- Proteins have been converted to amino acids
- lipids are either emulsified droplets or glycerol and fatty acids
- vitamins and nutrients have been released from the food
- through the Ileum
- all except for water, alcohol, and some monosaccharides
- long and folded internally
- thin, moist lining
rich blood supply
- surface area covered by villi and microvilli
- each villi has a capillary network and a lacteal
- ruffling of epithelial membrane which further increases surface are
- dense capillary network helps absorb nutrients right into the bloodstream
- minimizes diffusion distance between blood and nutrients
-absorb lipids from ileum to lymphatic system
- exocrine pits, release digestive juices
- facilitates movement of nutrients into blood stream
MR SLIM
- absorbed into blood capillaries through either simple diffusion or facilitaed diffusion
- facilitated if hydrophilic
- simlpe if hydrophobic
- into lacteals via simple diffusion
- endocytosis/pinocytosis through the lacteal
- active transport
- regulates blood glucose levels
- synthesizes plasma proteins
- blood components
- detoxifies blood
- demaminates amino acids into urea (removes NH4 by removing N) (urea is then drained through kidneys)
- converts haemoglibon into bile pgments by emusifying fat
- breaks down alcohol, drugs, etc
- prodices cholesterol
- stored vitamins and minerals
- indigestible food, cellulose, dead cells, bile pigments, and water pass through
- this is a thin liquid called chyle
- main secretion is mucous
- has lots of gut flora which is a symbiotic relationship
- water is reabsorbed and what is left is excreted out as feces
air filled space behind nose and in the skull, warms and humidifies air
antryway for nasal cavity, lined with hair and mucous
opening in upper back of throat, behind the uvula
flap that prevents anything but air from entering trachea
voice box, air passes through to create sound, located in the trachea
strong flexible tissue, structural support
windpipe, passage for air, warms air, lined with cillia to avoid debris
passage for air into lungs
contains part of the bronchi, bronchioles, and alveoli, function to permit gas exchange
further branches of bronchi
fluid filled space around the lungs, without which would tear
- contains respiratory and heart
band of muscles that separate thoracic cavity and predicts the movement of air through relaxation and contraction
air spaces where gas exchange happens
small blood vessels which surround each aveoli
blood that carries a high concentration of oxygen vs blood that carries a low concentration of oxygen (relative to the amount of coarbon dioxide)
when they are permeable, thin, moist, and have a large surface area
- single layer of flattened cells for small diffusion area
- dense capillary network tht maintian a concentration gradient
- high volume of spherical aveoli clumped together to maximize surface area
- cells in lining secrete fluid called surfactant for lubrication, allowing gases to dissolve from gas to liquid, and to prevent tearing/ripping
- branched network of bronchi allowing for more alveoli
thin epithelial cells within the alveoli that exchange gases efficiently through their flattened shape and therefore increased surface area
Granular, cube shaped epithelial cells within the alveoli that produce surfactant to prevent tearing
prevents the moist layer surrounding alveoli from increasing in surface tension and causing tearing and collapsing -it does this through moving with the alveoli when it is expanding- this also causes different sizes to inflate at roughly the same rate, easier for oxygen to diffuse through dissolution,
Because as an organism gets bigger, the volume between its outer cells and system gets bigger, and therefore more surface area is necessary to supply enough oxygen
pressure differences within and outside the system
- in - pressure in chest is less than outside
- out - pressure in chest is greater than outside
diaphragm regulates this
are antagonistic - internal and extrenal intercostals - and dictate how the diaphragm moves
in - eternal intercostals flatten diaphragm and increase the volume of the thoracic cavity
They pull the ribs up and outwards and contract the diaphragm
out - internal intercostals dome the diaphragm and decrease the volume of the thoracic cavity
They pull the ribs down and in
excersize and physical acitivty
more ATP is needed, produces more CO2, CO2 receptors sense this, demand for gas exchange increases
this will increase the frequency of breaths (ventilation rate) and tidal volume or depth of breaths
observation
chest belt and pressure meter
spirometer
tidal volume - normal
ERV - breath in normally and out as much as possible
IRV - how much breath can be inhaled - is only calculable
Vital Capacity - biggest inhale and exhale possible
sensors in the brain and ph changes
sensitive to acidity in blood, which is directly linked to the concentration of CO2 in blood, (due to reaction of CO2 and H20), repiratory will then stimulate intercostals and diaphragm to increase breathing rate and capacty (to expel CO2)
in the walls of cartoid and aortic arteries and are sensitive to changes in blood ph, also regulate O2 levels in blood and change breathing rates accordingly - too low and they increase breathing rate, but this is secondary to CO2 receptors
oxygen decreases as altitude increase, which is why the O2 receptors are important, and as such the depth of breath will increase (people living in high altitudes will have greater tidal volumes)
reduces oxygen levels through direct competition, can be solved through interacting with more oxygen
The haemoglobin has four bonding spots for oxygen on each side, this creates a gradient where the oxygen bonds increasingly fast until it slows down when there are no spaces left to bond, the same thing happens when carbon dioxide leaves into the aveoli
cardiac
smooth
skeletal